blast_开发者

Can I use BLAST to compare 2 non-biological strings?

I know what BLAST (The Basic Local Alignment Search Tool) was designed for. But I am interested in using such advanced te开发者_JS百科xt comparison and its final effects.You could use vmatch.[详细]

2023-04-11 09:34 分类：问答

BLAST Database allocation error

I asked this question on the bioinformatics version of stackexchange, but since I think it is a computer problem I thought I should try my luck here.[详细]

2023-04-06 12:04 分类：问答

wsimport import fails with NCBI/Blast

I\'m trying to generate the files handling the SOAP services documented here: http://www.ncbi.nlm.nih.gov/books/NBK55699/[详细]

2023-04-03 06:39 分类：问答

Using SimpleXML to Interpret BLAST XML Output--Hyphen problem? Nested object access syntax problem?

I\'m trying to use SimpleXML to read some NCBI BLAST XML output, and I\'m able to access some of the output, but not other bits of it.[详细]

2023-03-22 04:53 分类：问答

Getting top 10 sequences of BLAST results Bio Python

I want to get top 10 sequences of BLAST results (just the sequences, no alignment or score or e-value etc). I am inputting a text file containing 5 fasta file. So my output should be top 10 blast hits[详细]

2023-03-17 02:04 分类：问答

Should I use computer-aided verification tools?

I am interested in proving that some robot controller does not reach any faulty state, which I would define by a set of predicates. I know that there are open-source software tools to achieve that. Fo[详细]

2023-02-14 04:17 分类：问答

Python implementation of BLAST alignment algorithm? [closed]

Closed. This question does not meet Stack Overflow guidelines. It is not currently accepting answers.[详细]

2023-01-11 17:43 分类：问答

Fast Sequence Alignment on Unicode Strings

I want to run something like the BLAST algorithm to query a large database of unicode strings.开发者_C百科Most of the alignment software like BLAST expects nucleotide or protein strings as input.But m[详细]

2023-01-10 00:11 分类：问答

Running BLAST through XGrid

Does anyone have any experience running BLAST with XGrid? Googling reveals a tool called \'Xgrid BLAST\' existed but not where to ge开发者_开发问答t.BLAST is included with Xgrid. Quoting from \"Utili[详细]

2022-12-20 13:41 分类：问答