bioinformatics

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Is there a function that can calculate a score for aligned sequences given the alignment parameters?

I try to score the already-aligned sequences. Let say seq1 = \'PAVKDLGAEG-ASDKGT--SHVVY----------TI-QLASTFE\'[详细]

2023-02-25 18:52 分类：问答
Script for parsing a biological sequence from a public database in Python

Greetings to the stackoverflow community, I am currently following a bioinformatics module as part of a biomedical degree (I am basically a python newbie) and the following task is required as part o[详细]

2023-02-23 04:17 分类：问答
How to plot a gene graph for a DNA sequence say ATGCCGCTGCGC?

I need to generate a random walk based on the DNA sequence of a virus, given its base pair sequence of 2k base pairs. The sequence looks like \"ATGCGTCGTAACGT\". The path should tu开发者_StackOverflow[详细]

2023-02-23 02:27 分类：问答
Why does Pubmed generate different results from a PHP script than from a manual search?

I\'ve written a PHP script that automatically searches the NCBI Pubmed database based on a user input.It\'s quite a large script and I won\'t bother putting it all in here.But one problem that I can\'[详细]

2023-02-21 19:30 分类：问答
mitosis of a human cell

I\'m programming genetic processes in java for my project and I want simulate the mitosis of a human cell. A human cell contains 23 pairs of chromosome. Mitosis is basically a cell division, or reprod[详细]

2023-02-18 06:30 分类：问答
Control size of the output of seqLogo?

I am using the seqLogo package to draw some sequence Logos.I need to make the logos wider, the default drawing makes the logos into s开发者_如何学运维quare graphs.Is there a way to do this?You can vie[详细]

2023-02-16 23:42 分类：问答
Algorithm for variability analysis

I work with a lot of histograms. In particular, these histograms are of basecalls along segments on the human genome.[详细]

2023-02-16 02:07 分类：问答
Clojure or Scala for bioinformatics/biostatistics/medical research [closed]

Closed. This question is opinion-based. It is not currently accepting answers. Want to improve this question? Update the question so it can be answered with facts and citations by editing[详细]

2023-02-16 00:28 分类：问答
Mechanize Basic Questions

I am working with this website: http://bioinfo.uni-plovdiv.bg/microinspector/ And from the mech-dump, I get[详细]

2023-02-15 23:35 分类：问答
Scaling before anova?

I want to perform an anova analysis for identifying differentially expressed genes. 开发者_如何学CShould I scale the data using quantile normalization or median absolute deviation before looking for d[详细]

2023-02-14 11:30 分类：问答