fasta

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Convert GenBank Flatfiles to FASTA

I need to parse a preliminary GenBank Flatfile. The sequence hasn\'t been published yet, so I can\'t look it up by accession and download a FASTA file. I\'m new to Bioinformatics, so could someone 开发[详细]

2023-03-12 10:14 分类：问答
Efficient file buffering & scanning methods for large files in python

The description of the problem I am having is a bit complicated, and I will err on the side of providing more complete information. For the impatient, here is the briefest way I can summarize it:[详细]

2023-02-06 23:27 分类：问答
Binning sequence reads by GC content [closed]

This question is unlikely to help any future visitors; it is only relevant to a small geographic area, a specific moment in time,or an extraordinarily narrow situation that is not generally applic[详细]

2023-01-31 05:53 分类：问答
Searching FASTA file for motif and returning title line for each sequence containing the motif

Below is the code I have for searching a FASTA file entered at the command line for a user-provided motif. When I run it and enter a motif that I know is in the file it returns \'Motif not found\'. I\[详细]

2023-01-27 15:23 分类：问答
multiFASTA file processing

I was curious to know if there is any bioinformatics tool out there able to process a multiFASTA file giving me infos like number of sequences, length, nucleotide/aminoacid content, etc. and maybe aut[详细]

2022-12-12 14:26 分类：问答
Python: Removing characters from beginnings of sequences in fasta format

I have sequences in fasta format that contains primers of 17 bp at the beginning of the sequences. And the primers sometimes have mismatches. I therefore want to remo开发者_运维百科ve the first 17 cha[详细]

2022-12-09 22:44 分类：问答
amino acid composition_CSV_columnwise

Sample file: Column 10: A|Y|E|A Column 11: W|I|Q|Q How do I calculate amino acid composition (percentage) specific to each column?[详细]

2022-12-07 20:27 分类：问答