Sorting a boxplot based on median value

I'd like to use R to make a series o开发者_JS百科f boxplots which are sorted by median value. Suppose then I execute:

boxplot(cost ~ type)

This would give me some boxplots were cost is shown on the y axis and the type category is visible on the x-axis:

-----     -----
  |         |
 [ ]        |
  |        [ ]
  |         |
-----     -----
  A         B

However, what I'd like is the boxplot figures sorted from highest to lowest median value. My suspicion is that what I need to do is change the labels of the type (A or B) to numerically indicate which is the lowest and highest median value, but I wonder if there is a more clever way to solve the problem.

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Check out ?reorder. The example seems to be what you want, but sorted in the opposite order. I changed -count in the first line below to sort in the order you want.

  bymedian <- with(InsectSprays, reorder(spray, -count, median))
  boxplot(count ~ bymedian, data = InsectSprays,
          xlab = "Type of spray", ylab = "Insect count",
          main = "InsectSprays data", varwidth = TRUE,
          col = "lightgray")

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Yes, that is the idea:

> set.seed(42)                     # fix seed       
> DF <- data.frame(type=sample(LETTERS[1:5], 100, replace=TRUE), 
+                  cost=rnorm(100)) 
>
> boxplot(cost ~ type, data=DF)    # not ordered by median
>
> # compute index of ordered 'cost factor' and reassign          
> oind <- order(as.numeric(by(DF$cost, DF$type, median)))    
> DF$type <- ordered(DF$type, levels=levels(DF$type)[oind])   
>
> boxplot(cost ~ type, data=DF)    # now it is ordered by median

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Beware of missing values, you have to add na.rm = TRUE for it to work. If not, the code simply doesn't work. It took me hours to found that out.

  bymedian <- with(InsectSprays, reorder(spray, -count, median, **na.rm = TRUE**)
  boxplot(count ~ bymedian, data = InsectSprays,
          xlab = "Type of spray", ylab = "Insect count",
          main = "InsectSprays data", varwidth = TRUE,
          col = "lightgray")