I followed BioPerl manual: I cloned a fresh copy of bioperl-live
under ~/src
then added the following line to my ~/.profile
(I'm using Ubuntu):
export PERL5LIB="$HO开发者_运维问答ME/src/bioperl-live:$PERL5LIB"
However,BioPerl modules are not recognized in Eclipse, e.g.:
Can't locate Bio/Tools/GFF.pm in @INC (@INC contains:
/home/dave/workspace/.metadata/.plugins/org.epic.debug
/home/dave/workspace_workspace/mars/scripts/lib
/etc/perl
/usr/local/lib/perl/5.10.1
/usr/local/share/perl/5.10.1
/usr/lib/perl5
/usr/share/perl5
/usr/lib/perl/5.10
/usr/share/perl/5.10
/usr/local/lib/site_perl )
What do I miss?
~/.profile
is read when you log in. To use that setting until the next time you log in, start a terminal, run the export PERL5LIB=…
line, then start Eclipse or any other BioPerl-using program from that terminal.
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