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I need help on this data file to be edited in SOM_PAK format

开发者 https://www.devze.com 2022-12-27 10:48 出处:网络
I am working on Self Organizing Map (SOM) Implementation and I have a microarray dataset which I am trying to read in using some_read_data function, but I keep having an errors when I edit it to have

I am working on Self Organizing Map (SOM) Implementation and I have a microarray dataset which I am trying to read in using some_read_data function, but I keep having an errors when I edit it to have it in SOM_PAK form which is recognise by SOM for reading such as:

??? Error using ==> somtoolbox\som_read_data.m Only 69 vector components on input file data line 1 (dimension is 70)

Error in ==> SomMainFunction at 3 sD = som_read_data('B_r2.txt');

But, when I try to read the data without editing which is the original file (Editor: DEAD LINK!), it indicates "Data read OK", but I have the following error:

??? Error using ==> un开发者_高级运维known Out of memory. Type HELP MEMORY for your options.

Error in ==> somtoolbox\som_bmus.m at 189 Bmus = zeros(dlen,length(which_bmus));

Error in ==> somvis\somvis_p_matrix.m at 41 [dummy dists] = som_bmus (dat, dat, 2:datlen);

Error in ==> SomMainFunction at 16 [pheight rad_real perc] = somvis_p_matrix(sM,sD);

You can get the datafile from here (Editor: DEAD LINK!) you can also download the toolbox from here.

I need someone to help me correct this data for me and put it in SOM_PAK format. I have tried getting it in SOM_PAK format, but it still giving me errors.


In B_r2.txt your first column is not the data, just row numbers, delete it. The number in the first row should be number of columns. Why it's 47?

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