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Running BLAST through XGrid

开发者 https://www.devze.com 2022-12-20 13:41 出处:网络
Does anyone have any experience running BLAST with XGrid? Googling reveals a tool called \'Xgrid BLAST\' existed but not where to ge开发者_开发问答t.BLAST is included with Xgrid. Quoting from \"Utili

Does anyone have any experience running BLAST with XGrid?

Googling reveals a tool called 'Xgrid BLAST' existed but not where to ge开发者_开发问答t.


BLAST is included with Xgrid. Quoting from "Utilization of a Local Grid of Mac OS X-Based Computers using Xgrid":

Xgrid includes a powerful, customizable, general-purpose job submission interface and Xgrid BLAST, a fully functional, grid-enabled application based on Xgrid technology that runs instances of the NCBI BLAST local alignment search algorithm tool.

After you have installed Xgrid, you can open /Applications/Xgrid BLAST.app on any client computer.

For more information, see:

  • the Xgrid installation documentation by the University of Utah.
  • How to use Apple's xgrid for running BLAST jobs by the NACS Research Computing Support Group
  • Xgrid basics by the Blaxter Lab at the Institute of Evolutionary Biology, University of Edinburgh. It includes a sample Perl file to submit BLAST jobs to Xgrid.

Final tip, if you have any bioinformatics related questions on the future, there is a StackOverflow clone specifically geared towards bioinformaticians called BioStars. You might get a quicker answer there.

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