How can I visualize a Graph in (interactive) 3D with Python?

I have a Graph in Python like this one:

# Each element is a tuple with coordinates (x,y,z). 
# The index is the id of the vertex
vertexList = [(0,0,0),(1,0,0),(1,1,0),(0,1,0), 
               (0,0,1),(1,0,1),(1,1,1),(0,1,1)]

# Each element is a tuple with the vertex-ids and a weight (vertexId1, vertexId2, weight)
edgeList = [(0,1,1), (1,2,1), (2,3,1), (3,0,1),
               (0,4,1), 
               (4,5,1), (5,6,1), (6,7,1), (7,4,1)]
graph = (vertexList, edgeList)

This is a small example. The application I wrote uses graphs with about 100 vertexes and 300 edges.

I would like to visualize this with python, preferably with a library which is available for Ubuntu. It would be great if it were possible to move the graph in the 3D-visualisation.

What I've done so far

At the moment I use UBIGRAPH. The visualization and interaction is very good, but I can't specify coordinates for the vertexes:

def visulizeGraph(Graph):
    vertexList, edgeList = Graph
    ser开发者_StackOverflowver_url = 'http://127.0.0.1:20738/RPC2'
    server = xmlrpclib.Server(server_url)
    G = server.ubigraph;

    G.clear()
    for identifier, vertex in enumerate(vertexList):
        G.new_vertex_w_id(identifier)
    for vertex1, vertex2, weight in edgeList:
        x1, y1, z1 = vertexList[vertex1]
        x2, y2, z2 = vertexList[vertex2]

        G.new_edge(vertex1, vertex2)

matplot

I've found matplotlib, but its very big. I didn't find an example which does what I like, but I might have missed it. Its available for Ubuntu.

vtk

The same problem as with matplot. If you could give me some working examples it might be the best solution.

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When you looked at matplotlib, did you see mplot3d? This may be what you require.

MPlot3D

If not, I'm sorry I probably can't help any more than that.

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I've not used this myself yet (beyond running example scripts) but mayavi2 looks promising. It comes bundled with the enthought python distribution.

Also, a little of topic as it's not in your question, but networkx is pretty nice if your working with graphs in python.

Hope this helps a bit.