So I have a problem that is basically like this: I have a bunch of strings, and I want to construct a DAG such that every path corresponds to a string and vice versa. However, I have the freedom to permute my strings arbitrarily. The order of characters does not matter. The DAGs that I generate have a cost associated with them. Basically, the cost of a branch in the DAG is proportional to the length of its child paths.
For example, let's say I have the strings BAAA, CAAA, DAAA, and I construct a DAG representing them without permuting them. I get:
() -> (B, C, D) -> A -> A -> A
where the tuple r开发者_开发知识库epresents branching.
A cheaper representation for my purposes would be:
() -> A -> A -> A -> (B, C, D)
The problem is: Given n strings, permute the strings such that the corresponding DAG has the cheapest cost, where the cost function is: If we traverse the graph from the source in depth first, left to right order, the total number of nodes we visit, with multiplicity.
So the cost of the first example is 12, because we must visit the A's multiple times on the traversal. The cost of the second example is 6, because we only visit the A's once before we deal with the branches.
I have a feeling this problem is NP Hard. It seems like a question about formal languages and I'm not familiar enough with those sorts of algorithms to figure out how I should go about the reduction. I don't need a complete answer per se, but if someone could point out a class of well known problems that seem related, I would much appreciate it.
To rephrase:
Given words w1, …, wn, compute permutations x1 of w1, …, xn of wn to minimize the size of the trie storing x1, …, xn.
Assuming an alphabet of unlimited size, this problem is NP-hard via a reduction from vertex cover. (I believe it might be fixed-parameter tractable in the size of the alphabet.) The reduction is easy: given a graph, let each vertex be its own letter and create a two-letter word for each edge.
There is exactly one node at depth zero, and as many nodes at depth two as there are edges. The possible sets of nodes at depth one are exactly the sets of nodes that are vertex covers.
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