I have a loop like this
#!/usr/bin/env python
import matplotlib.pyplot as p
for i in xrange(N):
# Create my_image here
# Display this image
p.figure()
p.imshow(my_image)
p.show()
p.close()
This works fine when i=0. For the program to continue, I need to close the new figure created by pyplot. For all other loop iterations (i>0), another new figure is not created, a plo开发者_高级运维t is not presented and the program just moves on. Why does closing a figure making pyplot unable to open new one (like MATLAB)?
The behavior which I expect is:
- Execution stops at
p.show()
- When I close the figure, execution continues
- When
p.show()
is encountered again, the new image is displayed. - Repeat step 2 until no more plot to show
There might be a better way to animate imshow's, but this should work in a pinch. It's a lightly modified version of an animation example from the docs.
# For detailed comments on animation and the techniqes used here, see
# the wiki entry http://www.scipy.org/Cookbook/Matplotlib/Animations
import matplotlib
matplotlib.use('TkAgg')
import matplotlib.pyplot as plt
import matplotlib.mlab as mlab
import matplotlib.cm as cm
import sys
import numpy as np
import time
ax = plt.subplot(111)
canvas = ax.figure.canvas
delta=0.025
x=y= np.arange(-3.0, 3.0, delta)
x,y=np.meshgrid(x, y)
z1=mlab.bivariate_normal(x, y, 1.0, 1.0, 0.0, 0.0)
z2=mlab.bivariate_normal(x, y, 1.5, 0.5, 1, 1)
z=z2-z1 # difference of Gaussians
def run(z):
fig=plt.gcf()
for i in range(10):
plt.imshow(z, interpolation='bilinear', cmap=cm.gray,
origin='lower', extent=[-3,3,-3,3])
canvas.draw()
plt.clf()
z**=2
manager = plt.get_current_fig_manager()
manager.window.after(100, run, z)
plt.show()
It might be from a bug in previous versions of matplotlib. I was having a similar problem when I issued sequential show()
commands -- only the first would show (and stay); but, when I updated matplotlib to 1.0.1 the problem went away.
After tinkering around with unutbu's example, I found a behavior that I could normally and debug with PyDev where I could progressively see the plots.
import time, threading
import numpy
from matplotlib.pyplot import *
x = numpy.linspace(0, 10)
y = x**2
def main():
plot(x, x)
draw()
time.sleep(2)
plot(x, y)
draw()
thread = threading.Thread()
thread.run = main
manager = get_current_fig_manager()
manager.window.after(100, thread.start)
figure(1)
show()
I have long been looking into this problem and I may have a solution although I haven't thoroughly tested it yet.
The key is in writing code more like MatLab, name your figures and then call them to show()
.
eg.
from matplotlib import pyplot as plt
fig1 = plt.figure()
fig2 = plt.figure()
fig1.show()
fig2.show()
This might work for animations and plotting at different stages
Only set
import matplotlib.pyplot as plt
If you set for example as well :
import matplotlib
matplotlib.use('Agg')
This is interacting on the whole application.
And cause in my case this Issue
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